| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 42 [0] | [0] 43 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 40 (1.520) | 30/92 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
GTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTAT > NC_000913/2994944‑2995038 | gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa > 1:1764828‑M1/1‑48 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:1842776‑M1/47‑1 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:43864‑M1/1‑46 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:127024‑M1/49‑5 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:216679‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:375823‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:596537‑M1/1‑45 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta > 1:1176876‑M1/1‑44 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:1145333‑M1/48‑8 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt > 1:668610‑M1/1‑40 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt < 1:2035936‑M1/48‑9 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:355329‑M1/49‑11 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:644975‑M1/48‑10 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga < 1:108892‑M1/49‑19 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:543940‑M1/1‑28 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:1283723‑M1/1‑28 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaata < 1:488975‑M1/49‑24 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg < 1:120152‑M1/49‑27 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:290134‑M1/47‑28 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:264402‑M1/47‑28 (MQ=255) cttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:427386‑M1/48‑30 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:1148277‑M1/1‑18 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttt < 1:399796‑M1/48‑33 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttt < 1:1144365‑M1/48‑33 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:949032‑M1/48‑34 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:537102‑M1/1‑10 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:561987‑M1/1‑9 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:1782695‑M1/1‑8 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:1556188‑M1/1‑8 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:2027770‑M1/1‑8 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctggg < 1:1371820‑M1/47‑40 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:1865043‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacct < 1:1617391‑M1/44‑37 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtt < 1:1474357‑M1/38‑31 (MQ=255) ataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:1857369‑M1/48‑42 (MQ=255) ataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:23352‑M1/48‑42 (MQ=255) ataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:1192571‑M1/48‑42 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:2014047‑M1/49‑44 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtta > 1:477019‑M1/1‑4 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtta > 1:890157‑M1/1‑4 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtt < 1:1400657‑M1/48‑45 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:765039‑M1/1‑1 (MQ=255) | GTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTAT > NC_000913/2994944‑2995038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |