| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 28 [0] | [0] 27 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 27 (0.990) | 24/96 | 0.0 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > NC_000913/549569‑549663 | cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg > 1:853458‑M2/49‑49 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:1061955‑M2/2‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtg > 1:748006‑M2/48‑48 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 1:342111‑M2/45‑49 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:2035285‑M2/44‑49 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg > 1:1420417‑M2/44‑49 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 1:1739056‑M2/6‑1 (MQ=255) gccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg > 1:1844195‑M2/42‑49 (MQ=255) caaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACgcgc > 1:894679‑M2/40‑48 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa > 1:1354671‑M2/39‑49 (MQ=255) aaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCaa < 1:23551‑M2/11‑1 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt < 1:1573768‑M2/12‑1 (MQ=255) tgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa > 1:2096445‑M2/36‑49 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:1966342‑M2/32‑49 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:1352701‑M2/19‑1 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:1787713‑M2/22‑1 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:1879146‑M2/28‑49 (MQ=255) taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca > 1:787894‑M2/26‑49 (MQ=255) aagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat < 1:1485607‑M2/25‑1 (MQ=255) gcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg < 1:1961153‑M2/31‑1 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:1921838‑M2/12‑47 (MQ=255) cgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:633067‑M2/12‑47 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagta < 1:1593757‑M2/41‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:789626‑M2/45‑1 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGtagtag < 1:122945‑M2/45‑1 (MQ=255) tgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc < 1:794338‑M2/46‑1 (MQ=255) gtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgcg > 1:1373180‑M2/3‑49 (MQ=255) | TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > NC_000913/549569‑549663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |