| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 26 [0] | [0] 27 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 26 (0.970) | 19/94 | 0.2 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
AGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791205‑2791299 | aaaagctctattgtttacgttgggctaaacgcagggagactccccaCCt > 1:460619‑M2/47‑49 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCttt < 1:1324050‑M2/5‑1 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCttt < 1:1735543‑M2/5‑1 (MQ=255) aagctctattgtttacgttgggctaaacgcagggagactccccaCCttt > 1:1426100‑M2/45‑49 (MQ=255) gctctattgtttacgttgggctaaacgcagggagactccccaCCTTTg > 1:1753671‑M2/43‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:802037‑M2/41‑48 (MQ=255) tctattgtttacgttgggctaaacgcagggagactccccaCCTTTGaa > 1:1157767‑M2/41‑48 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:1426755‑M2/16‑1 (MQ=255) tttacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGAt < 1:704744‑M2/16‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg < 1:703357‑M2/17‑1 (MQ=255) tacgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATg < 1:58650‑M2/17‑1 (MQ=255) cgttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTa < 1:603987‑M2/19‑1 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCg < 1:1294233‑M2/22‑1 (MQ=255) ttgggctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCg < 1:1317715‑M2/22‑1 (MQ=255) ctaaacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGa > 1:1598230‑M2/23‑48 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt > 1:26028‑M2/20‑49 (MQ=255) aacgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACt > 1:1702935‑M2/20‑49 (MQ=255) cgcagggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACtt > 1:234411‑M2/18‑48 (MQ=255) agggagactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACg < 1:582622‑M2/35‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:309804‑M2/39‑1 (MQ=255) agactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAg < 1:1311861‑M2/39‑1 (MQ=255) gactccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGt < 1:1944449‑M2/40‑1 (MQ=255) actccccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTa < 1:1449563‑M2/41‑1 (MQ=255) cccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACt < 1:1810009‑M2/44‑1 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa > 1:1462581‑M2/4‑49 (MQ=255) ccaCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTa < 1:1417498‑M2/46‑1 (MQ=255) ccTTTGAAAACAGGATGTAGCGATGAAACTTAACGATAGTAACTTATTc < 1:1402581/49‑1 (MQ=255) | AGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC > NC_000913/2791205‑2791299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |