Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,829,233	C→A	L97M (CTG→ATG)	xanP →	xanthine:H(+) symporter XanP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,829,233	0	C	A	100.0%	116.7 / NA	29	L97M (CTG→ATG)	xanP	xanthine:H(+) symporter XanP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (12/17);  total (12/17)

ATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCT  >  NC_000913/3829190‑3829276                                            |                                            aTCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGAtgttg                                        <  1:1632661/49‑1 (MQ=255)   cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                      >  1:1099958/1‑49 (MQ=255)   cGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                      >  1:724376/1‑49 (MQ=255)    gATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTc                                      >  1:803605/1‑48 (MQ=255)      ttattCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAt                                   >  1:546642/1‑49 (MQ=255)        attCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTAtt                                  >  1:146099/1‑48 (MQ=255)           cAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAg                               <  1:1200985/48‑1 (MQ=255)            aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg                             <  1:1234225/49‑1 (MQ=255)            aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAggg                             >  1:1087142/1‑49 (MQ=255)            aaaTTAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAgg                              <  1:2113031/48‑1 (MQ=255)               ttAAGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                          <  1:2045864/49‑1 (MQ=255)                 aaGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAcc                         <  1:496562/48‑1 (MQ=255)                 aaGGCCTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCAc                          >  1:1110316/1‑47 (MQ=255)                     ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                    >  1:1265765/1‑49 (MQ=255)                     ccTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                    <  1:144324/49‑1 (MQ=255)                      cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                    >  1:1591004/1‑48 (MQ=255)                      cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCtt                    >  1:1913589/1‑48 (MQ=255)                      cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                   <  1:1159427/49‑1 (MQ=255)                      cTGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGAGCACCAGCTTc                   <  1:94996/49‑1 (MQ=255)                       tGGGGTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTc                   >  1:1157471/1‑48 (MQ=255)                         gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCa                  <  1:361291/47‑1 (MQ=255)                         gggTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCa                  <  1:11115/47‑1 (MQ=255)                           gTCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACtt              <  1:726445/49‑1 (MQ=255)                            tCCGGTTGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACttt             <  1:1069007/49‑1 (MQ=255)                                 ttGGCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGc        <  1:1135147/49‑1 (MQ=255)                                    gCTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGcccc     <  1:905144/49‑1 (MQ=255)                                     cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCg    <  1:1615540/49‑1 (MQ=255)                                     cTCCGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCg    <  1:1568820/49‑1 (MQ=255)                                        cGGGATGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCt  >  1:778431/1‑48 (MQ=255)                                            |                                            ATCGATTATTCAAATTAAGGCCTGGGGTCCGGTTGGCTCCGGGCTGTTGTCTATTCAGGGCACCAGCTTCAACTTTGTTGCCCCGCT  >  NC_000913/3829190‑3829276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑