| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 25 [0] | [0] 24 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 24 (0.900) | 23/94 | 0.1 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > NC_000913/20564‑20608 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTC > 1:2023450/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTTAATCTACCTC > 1:731451/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:1464193/49‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTACCTC > 1:144799/1‑48 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAA < 1:56458/49‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTAT < 1:1671554/49‑1 ATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCCACCTCCATGTGTAT > 1:1718645/1‑48 CGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCAC < 1:1660176/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:1116015/47‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:309397/49‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 1:2022714/48‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCT < 1:1591461/49‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:1337361/49‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT > 1:1216303/1‑49 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT > 1:168201/1‑49 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG < 1:1939104/48‑1 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:214132/1‑49 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG < 1:1630944/49‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:154797/1‑49 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 1:1150968/49‑1 GGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1132217/1‑49 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2072272/1‑48 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:1040363/49‑1 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:119005/1‑49 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:291153/1‑49 AGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15340‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > NC_000913/20564‑20608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |