Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 332,366 Δ44,951 bp pdeL–yaiL 39 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 332366 377316 44951 43 [0] [0] 38 pdeL–yaiL pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3323650 (0.000)38 (1.400) 33/96 0.0 100% intergenic (+489/‑6) yahV/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 377317 = NA (NA)intergenic (+6/+218) yaiL/frmB DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332318‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  >  NC_000913/377317‑377362
                                                                                              
AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGG                                               <  1:1670195/49‑1
     ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                          <  1:163023/49‑1
      CAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                                         <  1:990170/49‑1
       AGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC                                        >  1:1044871/1‑49
       AGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC                                        <  1:1668402/49‑1
         GTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGT                                      <  1:206132/49‑1
           AATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                                    >  1:766938/1‑49
              CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                   >  1:267362/1‑47
                 TCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT                              >  1:842842/1‑49
                  CATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                             >  1:911452/1‑49
                   ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                             <  1:767626/48‑1
                   ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                             <  1:224952/48‑1
                    TACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC                           <  1:1151532/49‑1
                      CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                         <  1:359732/49‑1
                         AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG                      <  1:1026996/49‑1
                         AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT                       <  1:674276/48‑1
                         AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT                       <  1:1960032/48‑1
                          ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                     >  1:1436219/1‑49
                           CAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCG                    <  1:1430579/49‑1
                           CAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCG                    <  1:1428480/49‑1
                            AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGA                   >  1:996965/1‑49
                            AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGA                   >  1:1964992/1‑49
                              CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG                 <  1:621652/49‑1
                              CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG                 >  1:1861773/1‑49
                               GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                >  1:1906314/1‑49
                                ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC                >  1:959447/1‑48
                                 TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA              >  1:806316/1‑49
                                 TAAAAGATAAAGGTGGATAAGTCGTGCGC‑CATGCCTGATGCGACGCTtt             >  1:1176429/1‑47
                                  AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT             >  1:303276/1‑49
                                   AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT             <  1:494796/48‑1
                                    AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC           <  1:1387027/49‑1
                                     AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCG          >  1:929498/1‑49
                                     AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCG          <  1:49335/49‑1
                                          AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT     >  1:1609535/1‑49
                                          AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC      <  1:499659/48‑1
                                           AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT     >  1:578611/1‑48
                                            GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTA   <  1:409847/49‑1
                                               GGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  >  1:1606842/1‑47
                                                                                              
AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332318‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  >  NC_000913/377317‑377362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.