| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 380,112 | Δ8,537 bp | [yaiO]–tauD | [yaiO], yaiX, insC‑1, insD‑1, yaiX, yaiP, ykiC, yaiS, tauA, tauB, tauC, tauD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 380112 | 388648 | 8537 | 23 [0] | [0] 23 | [yaiO]–tauD | [yaiO],yaiX,insC‑1,insD‑1,yaiX,yaiP,ykiC,yaiS,tauA,tauB,tauC,tauD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 23 (0.890) | 17/92 | 0.2 | 100% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 388649 = | 0 (0.000) | intergenic (+3/+104) | tauD/hemB | taurine dioxygenase/porphobilinogen synthase | |||||
GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380062‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGA > NC_000913/388649‑388695 GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTT < 1:1090857/49‑1 AGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:278740/1‑49 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:2041798/1‑46 AATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1719615/1‑46 ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA < 1:1514076/49‑1 ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:914392/1‑45 ATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC > 1:1541433/1‑45 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAt > 1:1483601/1‑48 TCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAt < 1:464276/49‑2 AGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAtg < 1:1538514/48‑3 AATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGAC < 1:1730751/49‑1 ATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGACG > 1:109416/1‑49 TTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGACGGT > 1:2074275/1‑49 AGGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGACGGTCCCC < 1:207698/49‑1 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGACGGTCCCCTCG > 1:721071/1‑49 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA‑TGGACGGTCCCCTCG > 1:820941/1‑49 AAGTTGCAGACCGTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGG > 1:656560/1‑46 TTGCAGACCGTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGG > 1:1353254/1‑49 CAGACCGTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:215392/1‑48 CAGACCGTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT < 1:1134194/48‑1 AGACCGTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGT > 1:1751908/1‑47 GTTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTG < 1:288851/49‑1 TTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGA < 1:884083/49‑1 TTACGAGA‑TGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGT > 1:1412954/1‑47 GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380062‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGA > NC_000913/388649‑388695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |