| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 25 [0] | [0] 25 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 25 (0.960) | 19/92 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
TGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603420‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGG > NC_000913/609352‑609392 TGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:374229/1‑48TGCTGAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:188803/1‑48 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:1150853/49‑1 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC > 1:986828/1‑49 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC > 1:1332762/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:664113/47‑1 TGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:1675222/1‑49 TGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:1661747/1‑49 GCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:1802237/1‑48 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT < 1:1990384/49‑1 CGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATC > 1:1957524/1‑49 CGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATC > 1:60539/1‑49 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCG < 1:1136846/49‑1 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG > 1:1809718/1‑49 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGT > 1:1569726/1‑49 GAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT < 1:2079667/49‑1 GAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT < 1:332818/49‑1 GCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:1190673/1‑47 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAG > 1:301190/1‑49 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAG > 1:990796/1‑49 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:1258289/1‑49 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGG < 1:1151630/49‑1 TCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAG < 1:1255234/48‑1 CCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTA < 1:1686765/49‑1 GTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGG > 1:1311085/1‑49 TGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603420‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGG > NC_000913/609352‑609392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |