Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	675,552	Δ7,819 bp		ybeQ–[hscC]	ybeQ, ybeR, djlB, ybeT, ybeU, djlC, [hscC]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	675552	683370	7819	39 [0]	[0] 39	ybeQ–[hscC]	ybeQ,ybeR,djlB,ybeT,ybeU,djlC,[hscC]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 675551	0 (0.000)	39 (1.440)	33/96	0.0	100%	intergenic (+51/+19)	ybeL/ybeQ	DUF1451 domain‑containing protein YbeL/Sel1 repeat‑containing protein YbeQ
	?	NC_000913	683371 =	0 (0.000)					coding (23/1671 nt)	hscC	chaperone protein HscC

CTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/675505‑675551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAA  >  NC_000913/683371‑683415                                                                                              CTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCAT                                             >  1:95075/1‑49  TGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATG                                            >  1:1362763/1‑49    ATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCAT                                             <  1:1142343/46‑1    ATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCAT                                             <  1:1509336/46‑1     TTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCG                                         <  1:924740/49‑1           ACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCT                                   >  1:178457/1‑49            CAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTG                                  <  1:680792/49‑1            CAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTG                                  <  1:1433205/49‑1             AGCAATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTG                                  >  1:2018736/1‑48                 ATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTA                             >  1:1406290/1‑49                 ATAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTA                             <  1:2076449/49‑1                  TAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTAT                            >  1:1602920/1‑49                  TAAAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTAT                            >  1:1868778/1‑49                    AAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCC                          <  1:1500275/49‑1                    AAGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATC                           >  1:1599962/1‑48                     AGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCA                         >  1:292333/1‑49                     AGAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCA                         <  1:1738874/49‑1                      GAGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCAT                        <  1:1339546/49‑1                       AGAATATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATT                       <  1:180425/49‑1                           TATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCAT                   >  1:1521807/1‑49                            ATGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATT                  >  1:2042081/1‑49                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTT                 <  1:1313908/49‑1                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTT                 <  1:89386/49‑1                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTT                 <  1:105126/49‑1                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATT                  <  1:913839/48‑1                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATT                  >  1:369050/1‑48                             TGGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATT                  <  1:790361/48‑1                              GGGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTA                >  1:604630/1‑49                               GGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTAT               <  1:129377/49‑1                               GGCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTA                <  1:401025/48‑1                                GCCGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATA              <  1:7824/49‑1                                  CGAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATGGATATC            <  1:124629/49‑1                                   GAATGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCT           <  1:1316896/49‑1                                      TGAAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGA        <  1:419115/49‑1                                        AAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAA      <  1:1326644/49‑1                                        AAATTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGA        >  1:414753/1‑47                                           TTCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAA   <  1:1341281/49‑1                                            TCCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAA   >  1:370473/1‑48                                             CCCATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAA  >  1:2008298/1‑48                                                                                              CTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/675505‑675551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAA  >  NC_000913/683371‑683415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.