| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 26 [0] | [0] 28 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 25 (0.940) | 20/94 | 0.1 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687815‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTA > NC_000913/689045‑689091 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTA < 1:1339179/49‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT > 1:1627468/1‑49 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:1803219/1‑49 TGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT > 1:284649/1‑49 TGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT > 1:24660/1‑49 TGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT > 1:577358/1‑49 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT < 1:257455/48‑1 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTT < 1:420034/48‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC > 1:1567183/1‑49 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:2084097/49‑1 TGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA > 1:1797608/1‑48 GTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAA > 1:365502/1‑49 TTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAAT > 1:62535/1‑49 TTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAAT < 1:1509018/49‑1 GCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:363595/1‑48 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:1726735/49‑1 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:1342120/1‑49 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:1335352/1‑49 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:151710/1‑49 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:2026304/48‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:900435/48‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT < 1:1238166/49‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT < 1:1123201/49‑1 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT > 1:1523908/1‑49 TGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT > 1:401153/1‑48 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTA < 1:1902212/48‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687815‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTA > NC_000913/689045‑689091 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |