Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	729,365	Δ9,598 bp		rhsC–ybfD	rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	729365	738962	9598	34 [0]	[0] 35	rhsC–ybfD	rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 729364	0 (0.000)	33 (1.270)	23/92	0.0	100%	intergenic (+24/‑219)	ybfA/rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
	?	NC_000913	738963 =	0 (0.000)					intergenic (+110/‑38)	ybfD/ybgA	H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA

AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/729315‑729364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCT  >  NC_000913/738963‑739008                                                                                                  AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGA                                                 <  1:584683/49‑1   AAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAC                                               <  1:1944990/49‑1   AAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAC                                               <  1:1506428/49‑1    AGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACG                                              <  1:985497/49‑1      GCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTC                                            <  1:1720464/49‑1       CAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCT                                           <  1:326740/49‑1       CAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCT                                           <  1:1981746/49‑1         ACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTAC                                         <  1:992277/49‑1         ACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTAC                                         <  1:270351/49‑1            GGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACT                                      >  1:273034/1‑49            GGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACT                                      >  1:1007140/1‑49             GTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACT                                      <  1:1827363/48‑1             GTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACT                                      <  1:1342530/48‑1              TGATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTA                                    <  1:114557/49‑1                ATTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTAC                                   <  1:896812/48‑1                 TTTTTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTC                                 <  1:617935/49‑1                    TTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCT                               <  1:1653658/48‑1                    TTATTGATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCT                               <  1:1487877/48‑1                         GATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAAC                         >  1:611331/1‑49                          ATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACC                        <  1:1897600/49‑1                          ATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACC                        >  1:988374/1‑49                          ATTGCTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACC                        <  1:1536487/49‑1                              CTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTC                    <  1:151302/49‑1                              CTGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCT                     >  1:1587028/1‑48                               TGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCT                     >  1:1139109/1‑47                               TGAGTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCT                     >  1:1195129/1‑47                                  GTTTTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGA                <  1:128528/49‑1                                     TTGAATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGC              <  1:1836827/48‑1                                        AATACATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGT           >  1:1563615/1‑48                                            CATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATG       <  1:126151/48‑1                                             ATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAA     >  1:947034/1‑49                                             ATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAA     >  1:22183/1‑49                                             ATTGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAA     >  1:1118423/1‑49                                               TGAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATC   >  1:493772/1‑49                                                 AACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCT  <  1:1289522/48‑1                                                                                                  AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/729315‑729364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAATGAATCT  >  NC_000913/738963‑739008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.