| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 29 [0] | [0] 28 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 26 (0.980) | 19/94 | 0.2 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1775306/1‑49 CGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:32475/1‑48 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:1800851/1‑49 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:994699/1‑48 GATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC > 1:267895/1‑48 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA < 1:1637100/49‑1 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:1383574/48‑1 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:783188/1‑48 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATC > 1:1213362/1‑48 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA > 1:1134296/1‑48 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:158448/1‑49 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:651624/48‑1 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:830272/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:1572439/1‑49 CTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:1693633/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:864530/48‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATA < 1:282756/49‑1 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG < 1:1788695/49‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGC < 1:1712193/47‑1 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1402797/1‑49 TATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1049832/1‑49 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:1207008/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:1225639/48‑1 CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT > 1:620941/1‑49 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 1:433632/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:2083400/1‑48 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA > 1:2056747/1‑48 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAA < 1:801835/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > 1:1033390/1‑49 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |