| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 39 [0] | [0] 42 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 39 (1.440) | 32/96 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997821‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > NC_000913/1004686‑1004733 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:132495/49‑1TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:310363/1‑49TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:308950/48‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:124691/48‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:1764238/49‑1 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:952599/48‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:842217/48‑1 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:210628/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG < 1:199861/48‑1 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGC < 1:1330635/48‑1 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:423655/1‑47 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:608746/1‑49 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC < 1:1871517/49‑1 TATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:1944061/1‑49 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:1101017/1‑49 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATT < 1:455696/48‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:994604/1‑49 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:1452014/1‑49 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:997862/1‑49 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG > 1:546653/1‑49 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:2090399/49‑1 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC < 1:1807918/49‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG < 1:629550/49‑1 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:421135/1‑48 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:491176/49‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT < 1:390146/49‑1 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 1:1580108/1‑49 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:1546629/49‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:1744557/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:272569/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:1116462/1‑49 GATAACGTTTGCCGCAGGTCAATCCCCTTTTGGTCCGAACTCGCACAT > 1:1874678/1‑48 AACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:969792/1‑49 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:593810/49‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > 1:1017818/1‑49 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:423459/48‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:565642/48‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA < 1:1349099/48‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 1:1865166/1‑49 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997821‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > NC_000913/1004686‑1004733 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |