Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,040,502 Δ73,763 bp [appX]–[mdtG] 75 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1040502 1114264 73763 32 [0] [0] 32 [appX]–[mdtG] [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 10405010 (0.000)32 (1.210) 26/94 0.0 100% coding (57/93 nt) appX small protein AppX
?NC_000913 1114265 = 0 (0.000)coding (1226/1227 nt) mdtG efflux pump MdtG

CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040457‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT  >  NC_000913/1114265‑1114309
                                                                                          
CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG                                            <  1:701516/48‑1
  TTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC                                         >  1:883470/1‑49
   TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC                                         >  1:976510/1‑48
       TCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC                                    >  1:391929/1‑49
        CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC                                   >  1:922093/1‑49
        CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC                                    <  1:1212088/48‑1
         GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                  <  1:647833/49‑1
         GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC                                   <  1:1945134/48‑1
          TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG                                 <  1:1232152/49‑1
          TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG                                 >  1:896213/1‑49
          TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG                                 <  1:1880618/49‑1
            GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG                               >  1:1661428/1‑49
            GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG                               >  1:1969496/1‑49
            GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG                               >  1:117053/1‑49
                  TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC                         >  1:1341490/1‑49
                    GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG                        <  1:389177/48‑1
                        ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC                   <  1:1293852/49‑1
                        ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC                   <  1:608109/49‑1
                          GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGA                 >  1:518409/1‑49
                           TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGAC                <  1:1821694/49‑1
                             TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG               >  1:327145/1‑48
                              TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG               >  1:404505/1‑47
                                GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGA           <  1:1057403/49‑1
                                GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG            <  1:1740371/48‑1
                                GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAG            <  1:1070094/48‑1
                                 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC          >  1:385139/1‑49
                                 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGAC          <  1:2099743/49‑1
                                    TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT       >  1:34665/1‑49
                                    TCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT       >  1:1858263/1‑49
                                     CCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTT      >  1:932509/1‑49
                                      CACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTC     >  1:658745/1‑49
                                         CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT  <  1:1840350/49‑1
                                                                                          
CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040457‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT  >  NC_000913/1114265‑1114309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.