| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 31 [0] | [0] 33 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 24 (1.190) +CAGATAATTCAA |
21/72 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > NC_000913/1223093‑1223138 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:1818486/48‑1AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:1889476/48‑1 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:888535/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:138236/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:721053/49‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAA < 1:1491406/49‑1 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:957267/1‑47 CCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:165934/1‑49 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC > 1:750694/1‑49 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:1588263/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:773463/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:1694331/49‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:1230809/48‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:875569/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:1965796/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT < 1:745359/48‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1109041/1‑48 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:1354297/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:1097787/1‑48 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:1289952/1‑48 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:945249/48‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT > 1:1225154/1‑49 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:276203/49‑1 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:1014325/1‑49 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:463915/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:1220195/49‑1 AGATCTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:1662919/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:1117808/49‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT > 1:1154490/1‑49 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:923358/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:894994/49‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:1257973/1‑48 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGA < 1:2101563/49‑1 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:747610/1‑48 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:980253/1‑49 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:461089/48‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:1526310/1‑47 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:1672746/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:1272639/1‑48 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:1555294/48‑1 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197090‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > NC_000913/1223093‑1223138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |