Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,400,325 Δ81,931 bp [abgT]–[azoR] 87 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1400325 1482255 81931 24 [0] [0] 28 [abgT]–[azoR] [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 14003240 (0.000)24 (0.880) 11/96 0.8 100% coding (1450/1527 nt) abgT p‑aminobenzoyl glutamate:H(+) symporter
?NC_000913 1482256 = 0 (0.000)coding (605/606 nt) azoR FMN dependent NADH:quinone oxidoreductase

‑CTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400276‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC  >  NC_000913/1482256‑1482302
                                                                                                 
cCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT                                                <  1:478480/48‑1
   ATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                             >  1:1898400/1‑49
      GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG                                             >  1:1882518/1‑46
        CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA                                         >  1:1371263/1‑48
           ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC                                      >  1:1280449/1‑48
                CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT                                >  1:1152491/1‑49
                 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG                               >  1:192147/1‑49
                  AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT                              <  1:1359649/49‑1
                    ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG                            <  1:1207274/49‑1
                    ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG                            <  1:1305018/49‑1
                    ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC                             >  1:163659/1‑48
                      ACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT                          >  1:424227/1‑49
                      ACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT                          >  1:1192822/1‑49
                           GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                     >  1:1598266/1‑49
                           GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG                     >  1:29936/1‑49
                                        GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT            >  1:1757041/1‑47
                                         CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAG         <  1:1173482/49‑1
                                          AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA        >  1:727759/1‑49
                                          AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA        <  1:1074811/49‑1
                                           GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC       >  1:241531/1‑49
                                              ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT    <  1:109502/49‑1
                                              ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT    <  1:126668/49‑1
                                               TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG   <  1:1961050/49‑1
                                                ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC  >  1:994448/1‑49
                                                                                                 
‑CTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1400276‑1400324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC  >  NC_000913/1482256‑1482302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.