| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,165,151 | Δ12,060 bp | yegP–gatY | 17 genes yegP, yegQ, cyaR, ogrK, yegZ, yegR, yegS, gatR, insE‑5, insF‑5, gatR, gatD, gatC, gatB, gatA, gatZ, gatY |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2165151 | 2177210 | 12060 | 29 [0] | [0] 28 | yegP–gatY | yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2165150 | 0 (0.000) | 28 (1.030) | 27/96 | 0.0 | 100% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 0 (0.000) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
CAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2165108‑2165150‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTT > NC_000913/2177211‑2177258 CAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTG > 1:1979096/1‑49 AGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGT > 1:1727834/1‑49 GAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTC < 1:1041016/49‑1 AAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCG > 1:78552/1‑49 ATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTT < 1:650534/49‑1 CGCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGT > 1:879740/1‑49 GCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTT > 1:264278/1‑49 GCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTT < 1:806406/49‑1 GCTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTT > 1:1206753/1‑49 CTCATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTT < 1:619447/49‑1 ATACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTC < 1:1014499/48‑1 TACTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGA > 1:630124/1‑49 CTTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATT < 1:531323/49‑1 TTTAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTT > 1:320731/1‑49 TAATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTT < 1:445525/47‑1 ATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAA < 1:1703625/49‑1 ATCGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAA > 1:1026198/1‑48 CGGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAA > 1:1579730/1‑48 GGTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATA > 1:699521/1‑49 GTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATAT < 1:1790241/49‑1 GTAAACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATA > 1:1360265/1‑48 AACAGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATATAAT < 1:1075711/49‑1 AGCACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGA > 1:622114/1‑48 CACCTTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAAT > 1:2082384/1‑49 TTTAGAATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATT > 1:1672705/1‑49 AGAATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTG < 1:1252090/48‑1 GAATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTT > 1:342803/1‑49 AATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTT < 1:384011/49‑1 CAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2165108‑2165150‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTT > NC_000913/2177211‑2177258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |