| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 28 [0] | [0] 27 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 27 (1.020) | 24/94 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > NC_000913/2336633‑2336676 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:1105203/1‑49 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:107941/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:768153/1‑48 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:1300036/49‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:1008745/1‑49 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:629395/1‑49 GATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:1953184/1‑49 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:1105575/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG > 1:1172964/1‑49 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:575855/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:682009/48‑1 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:1144713/48‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 1:1776146/1‑49 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT < 1:626313/49‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC < 1:295849/48‑1 CCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT > 1:1253596/1‑49 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:1398801/49‑1 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:1727552/49‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:1681216/1‑48 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:163536/49‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:456887/49‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:1557670/1‑47 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:765963/1‑48 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:182887/1‑48 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:442350/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:456105/49‑1 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:1716586/1‑49 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:119725/1‑49 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320095‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > NC_000913/2336633‑2336676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |