Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,466,545 Δ9,634 bp [intS]–[ypdJ] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2466545 2476178 9634 36 [0] [0] 37 [intS]–[ypdJ] [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24665440 (0.000)35 (1.290) 31/96 0.0 100% intergenic (+161/‑1) argW/intS tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
?NC_000913 2476179 = 0 (0.000)coding (86/141 nt) ypdJ CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466498‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAA  >  NC_000913/2476179‑2476225
                                                                                              
ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCT                                                <  1:1411836/48‑1
 CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAG                                              <  1:738368/49‑1
  GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA                                             <  1:707088/49‑1
   GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                            >  1:995445/1‑49
   GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                            <  1:1289962/49‑1
        AAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                       >  1:1850159/1‑49
           GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG                                    >  1:1965393/1‑49
                TAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                               >  1:1838326/1‑49
                 AAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                               >  1:1483158/1‑48
                 AAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                               >  1:488410/1‑48
                 AAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCA                               >  1:387035/1‑48
                   AATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACAC                            >  1:1489400/1‑49
                    ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACT                           >  1:1797967/1‑49
                     TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                          >  1:1054978/1‑49
                        TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                       <  1:1241211/49‑1
                        TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                       >  1:2029201/1‑49
                        TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                       >  1:1887844/1‑49
                          TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                       >  1:254487/1‑47
                           TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGA                     <  1:799573/48‑1
                            ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                   >  1:1979279/1‑49
                            ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                    <  1:860147/48‑1
                             CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                   <  1:1252810/48‑1
                              CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC                 >  1:1566347/1‑49
                               CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT                >  1:946803/1‑49
                               CACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT                <  1:1557384/49‑1
                                  CGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT              >  1:466274/1‑48
                                   GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT              >  1:174160/1‑47
                                   GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT              >  1:1115400/1‑47
                                    GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG           >  1:1658259/1‑49
                                    GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG           <  1:866958/49‑1
                                     ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGT          >  1:1676293/1‑49
                                        TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC       >  1:435218/1‑49
                                          TACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT      >  1:1850314/1‑48
                                           ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTT     <  1:1523136/48‑1
                                             CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAA  <  1:1014681/49‑1
                                                                                              
ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466498‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAA  >  NC_000913/2476179‑2476225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.