| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 24 [0] | [0] 24 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 23 (0.850) | 19/96 | 0.2 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509585‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA > NC_000913/2517950‑2517996 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAG > 1:36318/1‑49CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACA < 1:1073942/48‑1 CTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG < 1:812750/49‑1 GCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCAC > 1:1749068/1‑48 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1508444/49‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC > 1:584921/1‑49 CTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1187084/1‑46 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT < 1:1663454/49‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:948747/45‑1 CATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:336991/49‑1 CATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:722124/1‑49 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:1510963/1‑48 TAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:412390/1‑48 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:337551/1‑48 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:588824/1‑48 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:1216236/1‑48 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA > 1:940043/1‑48 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:743269/1‑48 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1100380/1‑48 GGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:588497/1‑47 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGC > 1:1941508/1‑48 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA < 1:1988319/49‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:1881388/1‑48 CAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509585‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAA > NC_000913/2517950‑2517996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |