| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 20 [0] | [0] 21 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 20 (0.750) | 16/94 | 0.3 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
AAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756113‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT > NC_000913/2791251‑2791297 AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:1336955/1‑49AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT < 1:1635752/49‑1AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:108320/1‑49 ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:1509195/1‑47 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:880285/1‑49 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:2082753/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:261567/46‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:1560886/46‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:1874605/48‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:1473986/48‑1 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT < 1:618289/46‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:416379/48‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA < 1:49783/49‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 1:1741040/49‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:1683679/49‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:638433/49‑1 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG < 1:373368/49‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT < 1:1335703/49‑1 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA < 1:686487/49‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT < 1:1568190/49‑1 AAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756113‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT > NC_000913/2791251‑2791297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |