| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 24 [0] | [0] 26 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 23 (0.890) +GA |
19/92 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110636‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > NC_000913/3136382‑3136428 || TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:981860/1‑49TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:652480/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:269566/47‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:739985/1‑49 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:522300/49‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:2034548/1‑49 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:925615/1‑49 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:319957/49‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:881283/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:984469/48‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:310806/1‑49 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:1045539/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:192725/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:216438/48‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:217530/49‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:732098/1‑48 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:1004342/1‑48 aCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2016452/2‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:369602/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:491794/1‑48 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:354969/1‑49 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:1966686/49‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:1955352/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:733743/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:1511322/48‑1 || TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110636‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > NC_000913/3136382‑3136428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |