| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 29 [0] | [0] 28 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 27 (1.020) | 25/94 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618944‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:328445/1‑48 GCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:252965/1‑49 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT > 1:890205/1‑49 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC < 1:1860110/49‑1 ACGGGAAATTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:1274683/1‑49 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:1047129/1‑49 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:590874/1‑48 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCA < 1:1460103/49‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA > 1:1507428/1‑49 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:77281/1‑49 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:1513537/1‑49 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:35187/49‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:1518715/1‑49 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT > 1:1914024/1‑49 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT > 1:2021143/1‑49 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:1651099/48‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT < 1:1205347/49‑1 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:647430/1‑49 TGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1954084/1‑49 TGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:1997170/1‑49 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:579912/49‑1 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:1307888/1‑47 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:1652144/49‑1 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG < 1:365326/49‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 1:1065442/49‑1 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC < 1:648424/49‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT > 1:703765/1‑49 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT < 1:218521/49‑1 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:1817836/1‑48 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618944‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |