Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 35 [0] [0] 34 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)31 (1.170) 24/94 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555444‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  >  NC_000913/4597014‑4597061
                                                                                               
TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                  >  1:1038776/1‑47
 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA                                                <  1:636203/48‑1
   CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:959784/1‑49
     ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:128526/1‑47
     ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                             >  1:296207/1‑47
      TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG                                            <  1:1318598/47‑1
        TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        >  1:1675934/1‑49
         GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        >  1:1363846/1‑48
         GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        >  1:1579252/1‑48
          TATAACTTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                      >  1:1494756/1‑49
          TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                      >  1:1902362/1‑49
          TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT                                       <  1:834581/48‑1
          TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT                                       <  1:780944/48‑1
          TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT                                        <  1:1970979/47‑1
          TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA                                         <  1:295802/46‑1
                  GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                              >  1:1073674/1‑49
                  GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                              >  1:1217553/1‑49
                     TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC                           <  1:1823325/49‑1
                     TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                            >  1:110316/1‑48
                      GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGGTTATTAAAGTTGCCA                          >  1:1366130/1‑49
                       TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA                          <  1:1680560/48‑1
                         AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                        <  1:1867772/48‑1
                         AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                        <  1:174748/48‑1
                          GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA                      <  1:670410/49‑1
                          GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA                      <  1:751463/49‑1
                              TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT                  >  1:1247264/1‑49
                                ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC                >  1:678242/1‑49
                                 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATTCAGCGTCCG               >  1:721755/1‑49
                                   CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG              <  1:1358005/48‑1
                                      CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG            >  1:713012/1‑47
                                          GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT        <  1:1541994/47‑1
                                           TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT     <  1:350198/49‑1
                                              TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  <  1:1707446/49‑1
                                              TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  <  1:289427/49‑1
                                              TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  >  1:720412/1‑49
                                                                                               
TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555444‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG  >  NC_000913/4597014‑4597061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.