| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,626,183 | (GCG)3→2 | coding (272‑274/1383 nt) | radA → | DNA recombination protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4626176 | 4626178 | 3 | 22 [0] | [0] 24 | radA | DNA recombination protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4626179 = | 0 (0.000) | 17 (0.740) | 14/82 | 0.3 | 100% | coding (268/1383 nt) | radA | DNA recombination protein |
| ? | NC_000913 | = 4626175 | 0 (0.000) | coding (264/1383 nt) | radA | DNA recombination protein | |||||
ACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626226‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 ACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:1025471/1‑48 CCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:2050321/1‑47 CAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAG < 1:1623154/49‑1 TTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGC > 1:596455/1‑49 CCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCG > 1:1798312/1‑48 CAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAA > 1:1458954/1‑49 ATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACT > 1:1798232/1‑49 TCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTC < 1:370577/49‑1 AGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTT > 1:760293/1‑49 AATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTT > 1:891230/1‑48 AATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTT > 1:1755062/1‑48 GCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATC > 1:276889/1‑49 GCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATC > 1:507097/1‑49 GCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAAT < 1:197614/48‑1 GCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAAT < 1:1456224/48‑1 CACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCC > 1:1632064/1‑49 TTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGT > 1:1973875/1‑49 CTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGA < 1:622199/49‑1 CACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGC > 1:220628/1‑49 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGG < 1:356860/49‑1 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGG < 1:754135/49‑1 CGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAG < 1:1119551/49‑1 CTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC > 1:48792/1‑49 CTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < 1:1481077/49‑1 ACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626226‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |