| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 24 (0.940) | 21/90 | 0.1 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846252‑2846348 | cGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA > 1:1988188‑M1/1‑49 (MQ=255) gCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:1338542‑M1/49‑3 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtca > 1:1771169‑M1/1‑46 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat > 1:1441831‑M1/1‑45 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:294269‑M1/1‑37 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:58076‑M1/1‑35 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 1:1787802‑M1/1‑33 (MQ=255) cAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcga > 1:2021656‑M1/1‑33 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc < 1:253139‑M1/49‑20 (MQ=255) gCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga > 1:195113‑M1/1‑27 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacat > 1:870919‑M1/1‑25 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1548915‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatct < 1:250209‑M1/48‑27 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:2020788‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:392546‑M1/1‑21 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac > 1:152286‑M1/1‑19 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1457886‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1378421‑M1/1‑18 (MQ=255) gtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:785302‑M1/48‑31 (MQ=255) tACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:34960‑M1/1‑16 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:773073‑M1/49‑36 (MQ=255) aCAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgc > 1:1636963‑M1/1‑10 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcga > 1:56729‑M1/1‑8 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:1870676‑M1/1‑7 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:438479‑M1/49‑43 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaa < 1:200518‑M1/49‑49 (MQ=255) | CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAG > NC_000913/2846252‑2846348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |