mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,958,652 | 0 | T | C | 70.4% | 150.7 / 87.9 | 98 | M228T (ATG→ACG) | ilvC | ketol‑acid reductoisomerase (NADP(+)) |
| * | NC_000913 | 1,994,267 | 0 | T | C | 58.8% | 35.5 / 68.0 | 51 | K147R (AAG→AGG) | uvrC | excision nuclease subunit C |
| * | NC_000913 | 941,713 | 0 | T | G | 55.6% | 11.3 / 24.8 | 18 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.5% | 17.7 / 67.0 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,052,705 | 0 | G | A | 37.5% | 8.3 / 15.8 | 16 | H272Y (CAC→TAC) | ubiH | 2‑octaprenyl‑6‑methoxyphenol hydroxylase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 541421 = | 0 (0.000) | 49 (2.570) +GAGGTTTTACCTCC |
3/68 | 2.0 | 100% | coding (857/1302 nt) | ybbY | putative purine transporter |
| ? | NC_000913 | 1209628 = | 0 (0.000) | pseudogene (28/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||