Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	281390	281440	51	2 [1]	[1] 2	yagA	CP4‑6 prophage; integrase core domain‑containing protein YagA

GCACGGTCTCGCGCCGTTCATCGGTACAGTGCGCCAGGCACAGGGAAAAACGGGAGTGGTCGTCCAGCAGGGTGAGCGGATGGCAGCGTCCACCGCCAAAAGGAAAGTGGCCCTTAAAATCCATCTGCCAGAGGCGGTTCGGC  >  NC_000913/281422‑281564                    |                                                                                                                            gcACGGTCTCGCGCCGTTCATCGGTACAGTGCGCCAGGCACAGGGAAAAACGGGAGTGGTCGTCCAGCAGGGGGAGCGGATGGCAGCGTCACCCGCCCAAAGGAAATGGGCCCTTAAACTCCATCTGcc                >  1:307834/1‑129 (MQ=255)               cgtcaaTCGGCAAAGTGCGCC‑CGCACCGGGAAAAACGGGGGTGGGCCGCCAGGAGGGTGAGCCGATTGCAGCGTCCACCGCCAAAAGGAAAGTGGCCCTTAAAATCCATCTGCCAGAGGCGGTTCGgc  <  1:222442/123‑1 (MQ=255)                    |                                                                                                                            GCACGGTCTCGCGCCGTTCATCGGTACAGTGCGCCAGGCACAGGGAAAAACGGGAGTGGTCGTCCAGCAGGGTGAGCGGATGGCAGCGTCCACCGCCAAAAGGAAAGTGGCCCTTAAAATCCATCTGCCAGAGGCGGTTCGGC  >  NC_000913/281422‑281564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑