| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,197,502 | 0 | C | T | 100.0% | 20.7 / NA | 10 | G11R (GGA→AGA) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (3/7); total (3/7) | |||||||||||
CGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGC‑TTCTAATATA‑CTCGCAAAGATATCTAGAGGGC‑ATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTGGGCT > NC_000913/1197388‑1197612 | ccgcaccAAAATTCAGGGCGTGGCCATTTTTCCCAATGC‑TTCTAATATA‑CTCGCAAAGATATCTAGAGGGC‑ATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt < 1:565726/124‑1 (MQ=255) aaaTAAAGGGCGTGGCC‑TTTTTCACAAGGCTTTCAAATA‑C‑CTCGCAAAG‑TATGTAGAGGGCAATCGTA‑GGGGTTTTGCTGGCTTCCCTGAGCGAATTTTAACTCTGTGCATATTATAGTTCAAAGCAAg < 1:438984/129‑1 (MQ=255) aatcaGGGCGTTGGCATTTTTCTCAATGC‑GTCTAA‑ATATCTCGCAAAGATATCCAGAGGGC‑ATCGGATTAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAg < 1:555712/125‑1 (MQ=255) cGCAAAGATATCTAGAGGGC‑ATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTTTGCATATTATAGTTCAAAGCAAGTACAATTCAATTATTTTTATTTTTAGTGAAAAATCTtttta > 1:584785/1‑129 (MQ=255) tCTAGAGGGC‑ATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATAATAGTTCAAACCCATTCCCCTTAAATAATTGTT‑TTTTTTTTTAAAAAATCTTTTATTTTTTctccg > 1:430989/1‑125 (MQ=255) catgTATGAGGTTTTGCTTCATTCTCTGAGCGAATATTAACTCTGGGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGAt < 1:236727/122‑1 (MQ=255) gAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCgcctt > 1:609983/1‑129 (MQ=255) tgcATTCTCCGGGCGAAATTTTACTTTGGGCATATTATAGTTCAAAGCAAGTTCCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTGATCGTCCGGGATTTTTCCGACTTGACTTTCAGt < 1:104879/129‑1 (MQ=255) tctcgggCGAATATTAAACTTGTGCAAATTATAGGTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTggg < 1:282115/123‑1 (MQ=255) ccgggCGAATATTAACTCTGTGCATATTAAAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTGGGCt < 1:311122/125‑1 (MQ=255) | CGCAGCCAAAATCAAGGGCGTGGCCATTTTTCTCAATGC‑TTCTAATATA‑CTCGCAAAGATATCTAGAGGGC‑ATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTTATTTTATCGTCCGGGATTTTTCCGACTTGACTTTCAGTTCTGGGCT > NC_000913/1197388‑1197612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |