| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 86 [0] | [0] 86 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 85 (0.960) | 58/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:1185653/50‑1CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:2631299/1‑50CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:1483214/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:4326671/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:570165/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:5259846/1‑49 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:2529922/1‑49 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:4068458/1‑49 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:4579410/1‑50 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:538725/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:4396400/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:1881251/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCGTTGAAGC < 1:4350786/50‑1 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:882230/1‑49 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 1:1436809/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:4148489/1‑48 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:3222977/1‑50 AACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC > 1:3764975/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:5079933/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 1:4116419/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:1663493/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT < 1:2638677/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:6279956/1‑50 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:3499457/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:933846/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:385229/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:2155917/1‑50 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:164296/1‑50 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 1:6180198/50‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 1:1636161/50‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:4364854/1‑49 AGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA > 1:6192914/1‑50 AGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA > 1:2942981/1‑50 AGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCCCAATA > 1:3419641/1‑50 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:4274458/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:1781943/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:5747535/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 1:2574035/49‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 1:1856424/49‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:5748829/1‑49 TTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:2311596/1‑50 TTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:5785180/1‑50 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:6053417/1‑49 TTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTAC < 1:2193525/49‑1 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:809178/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:3967565/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA < 1:3238531/49‑1 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:1561720/1‑50 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:279066/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT > 1:3343350/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:5538414/1‑50 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:5085666/1‑49 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:1477288/1‑49 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA < 1:522243/50‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:5276159/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:4981135/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:390260/1‑48 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:1104065/1‑50 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:1467505/50‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:4441609/50‑1 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:5680280/1‑49 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:2562875/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:181695/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:6629840/1‑48 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGA < 1:3654514/50‑1 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3955905/1‑48 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:3469836/1‑48 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:3272847/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:1481235/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:575738/1‑47 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT < 1:1110825/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:1742152/1‑45 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:6120106/1‑45 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:1123304/50‑1 GCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT > 1:6696081/1‑48 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG > 1:3661165/1‑50 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG < 1:1535495/50‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 1:1919166/1‑50 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTC < 1:1076259/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 1:2319293/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 1:2370484/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 1:305375/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 1:4372654/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 1:4607696/1‑50 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:5625131/1‑50 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |