| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 130 [0] | [0] 121 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 93 (1.400) +CAGATAATTCAA |
53/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 144 total aligned reads displayed.
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:5552377/49‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT < 1:1107007/50‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT < 1:1051331/50‑1 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:4147430/50‑1 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATA < 1:2993291/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:5731796/1‑50 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:693547/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2342300/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:854611/1‑50 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:1474080/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:6538306/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:3892554/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:3290683/48‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT < 1:182268/47‑1 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAA < 1:2581660/50‑1 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAA < 1:6050518/50‑1 CCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAA < 1:5885222/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:425675/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:5940513/1‑48 TCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAG > 1:4854890/1‑50 CCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC > 1:1620302/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAa < 1:846067/48‑2 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:6177114/50‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:955668/50‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:5629582/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:4523707/1‑50 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT > 1:6269122/1‑50 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:2901910/1‑50 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG > 1:3750947/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:5761424/48‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT < 1:6060204/48‑1 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC > 1:5604090/1‑50 TTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGC > 1:528508/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:6384180/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:3687611/49‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG < 1:6576916/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:3023246/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:407339/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:5264115/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:2414480/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:4410485/1‑50 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:991025/1‑50 AATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:1679534/1‑49 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:4373964/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:1752708/49‑1 CTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:349417/1‑48 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:2090092/1‑50 CTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:3041647/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:6415752/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:2710961/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:2443370/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:134332/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:2832019/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:452302/46‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:697010/46‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGAT < 1:6635933/46‑1 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:4199877/1‑50 TGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA > 1:326436/1‑50 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA < 1:1138656/49‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:861100/48‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:6568125/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:229573/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:5396589/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:3994083/49‑1 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:1453489/1‑50 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:2582451/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:4333253/1‑50 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:1308877/50‑1 GAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTT < 1:5903497/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:4719762/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:1530706/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:4231279/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:3593619/1‑50 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:761132/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:2414302/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:4303074/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:5057585/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:2134371/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA > 1:4370833/1‑50 TATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:6014415/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:415775/1‑50 CAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:2246192/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG < 1:3551187/49‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:3001235/1‑49 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA < 1:1814156/50‑1 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:6195783/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:2763206/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:3276579/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:1557437/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:5803760/50‑1 AATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:5251875/1‑48 AATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT > 1:717122/1‑48 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:5805782/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGA < 1:2651189/49‑1 TCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:5865462/1‑50 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:4908431/49‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:1868876/49‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA < 1:1987993/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT > 1:2488120/1‑49 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA < 1:2584998/50‑1 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |