| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 120 [0] | [0] 121 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 115 (1.330) | 67/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 120 total aligned reads displayed.
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAA < 1:6535933/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:5300396/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:2097262/1‑50 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG < 1:5699652/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:2789546/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC > 1:3364556/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:3300400/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:5041326/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:4117026/50‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:3370841/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:2554631/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:2429008/49‑1 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:4245851/49‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:6541414/50‑1 CGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:1573680/1‑48 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:1704383/50‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:1584982/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:2077278/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:670711/1‑50 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:2852677/50‑1 TGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGT < 1:6294539/50‑1 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:1541830/1‑50 GCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:2050224/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC < 1:5622668/50‑1 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC < 1:1240133/50‑1 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG < 1:3736600/49‑1 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:2081642/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:2820971/1‑50 ATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:486819/1‑49 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:2577754/48‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:3394287/48‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:115731/48‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1707202/1‑48 GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:732668/1‑50 GTTATTGACACACAAAAGAGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:4548443/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:4272921/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG < 1:5274140/49‑1 TATTGACACACAAAAGCGTTGAGGAACAGCGAGAAGCGCAGTGCCCAGC > 1:906246/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1804044/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:4189957/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:5417520/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:1220834/1‑50 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC < 1:4551028/49‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT > 1:5882072/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:2762833/50‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:6582813/1‑50 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC > 1:2350571/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:115589/49‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:3714609/1‑49 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:5376865/1‑50 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT < 1:3966374/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:3080632/1‑49 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA > 1:1431041/1‑50 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:1017289/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:347913/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:1247246/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:2911317/1‑50 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG < 1:3784355/50‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG < 1:1290662/50‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG > 1:2847850/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC > 1:1075335/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC > 1:6508953/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC > 1:6345003/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC < 1:2173898/50‑1 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC > 1:3078574/1‑50 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC < 1:306410/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:5382690/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:5692636/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:5940406/50‑1 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC < 1:1672951/50‑1 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:5527657/1‑50 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT < 1:4602071/50‑1 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:5432755/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 1:5617978/1‑50 GAGGAACAGTGAGAAGCGCAGTGCTCAGCCATCCCGATACTGCTGCTTT < 1:5457362/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:3172544/49‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:897822/49‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:2055676/1‑50 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:174866/1‑50 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC < 1:2277347/50‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:4918404/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA < 1:6574987/50‑1 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:2692739/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:5191106/1‑49 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAA < 1:4620759/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:3796071/1‑50 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC < 1:1869967/50‑1 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC < 1:1722375/50‑1 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATC > 1:2328818/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:4932470/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:438296/1‑50 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC > 1:3083679/1‑50 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:4826718/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTT < 1:5672413/50‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:2664528/49‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:6335009/50‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 1:1378007/1‑50 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG < 1:6583996/50‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 1:6460083/1‑50 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > 1:879573/1‑50 CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627469‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |