| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 126 [0] | [0] 121 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 119 (1.370) | 69/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 126 total aligned reads displayed.
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:3764067/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:2071957/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:4167267/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:5050008/1‑50AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT > 1:6651471/1‑50 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG < 1:3162553/50‑1 CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:2892952/1‑49 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:1667972/1‑50 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:896174/50‑1 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:6137762/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:1744957/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:5631151/50‑1 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:2213011/50‑1 CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG > 1:2984170/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:2794793/1‑50 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:4174441/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG < 1:5337596/49‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:1691252/50‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:1069782/1‑49 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:2092456/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:1049243/50‑1 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:6299883/50‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:1967520/50‑1 CCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:3047225/50‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:2599569/50‑1 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:185329/1‑49 TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:661285/1‑49 TTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:6391230/1‑48 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:2529729/1‑50 TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:3008181/1‑50 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:3742502/1‑49 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:1060333/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:118211/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:3480122/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:1417336/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:5469887/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:4332365/1‑49 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA > 1:3005937/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 1:2277034/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 1:3039997/1‑49 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA > 1:4382058/1‑49 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:2077816/50‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA > 1:2594032/1‑50 GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:4298882/1‑50 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:6639467/50‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:6195446/49‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:5982024/1‑49 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA < 1:446966/48‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG > 1:4685256/1‑49 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 1:2699582/1‑49 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:5718241/1‑50 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:3192659/1‑49 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA < 1:123108/50‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAAC < 1:2830182/49‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:2122264/1‑48 TTAAACATACTCGCGAGCGCGTCGCTACCCTAGCAAGCAAAAATGAAAC < 1:2030703/49‑1 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:1175243/1‑50 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:501909/1‑49 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:2854070/1‑49 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA < 1:5900910/50‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG < 1:2119843/49‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG < 1:822152/49‑1 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:6128072/1‑50 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:4849755/1‑50 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:3875762/1‑49 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:1255247/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA < 1:315409/50‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:6504253/1‑49 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:4901856/1‑49 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA > 1:4506721/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC < 1:1036503/50‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:3504115/1‑50 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:6398397/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:2359940/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:6076790/49‑1 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC > 1:6495023/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAA < 1:3566029/50‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:1998870/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA > 1:1395531/1‑49 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA < 1:2568348/49‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA < 1:4133717/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT < 1:4227061/50‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:5658816/1‑50 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT > 1:1489409/1‑50 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG > 1:1395423/1‑50 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:3803938/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG < 1:835429/50‑1 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG > 1:2701493/1‑50 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:4278465/50‑1 CGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGG < 1:6504220/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA < 1:2443711/50‑1 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA > 1:1540514/1‑50 GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA > 1:6488211/1‑50 tGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:3648156/49‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:184759/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:709463/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT < 1:518560/50‑1 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT > 1:2035572/1‑50 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG < 1:5423947/50‑1 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT < 1:2981266/50‑1 AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962516‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979330‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |