| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 61 [0] | [0] 62 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 60 (0.680) | 44/98 | 0.2 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:1624419/1‑50 ATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT > 1:1208187/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGTGAGGCTGCTCGGTTC > 1:4041166/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:4164073/50‑1 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:723260/49‑1 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT < 1:4105978/49‑1 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC > 1:6590292/1‑50 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG > 1:5669449/1‑49 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCG > 1:803565/1‑49 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT > 1:5824111/1‑49 AGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGT > 1:2283364/1‑49 GCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAA > 1:2548473/1‑50 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:6257284/50‑1 CAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC < 1:3626543/50‑1 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGGAACG > 1:3531068/1‑50 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGg > 1:1994324/1‑49 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGT < 1:6277115/50‑1 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGT > 1:715634/1‑50 AAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTT > 1:1366138/1‑50 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA < 1:2550409/50‑1 CTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCCGTAACGTTTAT > 1:1527158/1‑50 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCA < 1:780266/49‑1 TCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG > 1:2591188/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTT > 1:6328336/1‑50 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:4531227/50‑1 AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA < 1:4359292/50‑1 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:6684052/1‑50 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:4274038/1‑50 AACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:806412/1‑50 ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT < 1:4692688/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:5589087/1‑49 GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG > 1:4110118/1‑50 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:2248294/50‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA > 1:2468150/1‑50 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:6092532/50‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA < 1:702310/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:5765309/50‑1 GCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC > 1:844122/1‑50 GCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATC > 1:2724976/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:2030516/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:397352/50‑1 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:6204554/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:286003/1‑49 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA < 1:5725350/50‑1 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA < 1:3582119/50‑1 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA < 1:5629091/50‑1 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA > 1:4488636/1‑49 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA > 1:5626827/1‑49 CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAA < 1:5096073/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATA < 1:5645963/50‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:4665819/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT > 1:6471882/1‑49 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA < 1:2668278/48‑1 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:3888682/1‑50 TCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA > 1:2888718/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:4047431/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA < 1:6132153/48‑1 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:6349433/1‑50 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > 1:5390765/1‑50 GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC < 1:6048321/50‑1 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC > NC_000913/2023679‑2023727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |