| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 77 [0] | [0] 83 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 74 (0.870) +GA |
50/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:397679/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:74289/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:3082702/1‑50 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:4745763/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:4551440/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:1533397/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:4629610/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:5610871/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:3859284/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:1428535/49‑1 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC < 1:5156631/48‑1 TCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT > 1:5323870/1‑50 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:5260744/1‑50 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:4411802/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:4653877/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:3743582/48‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:3686145/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:2447165/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:2799139/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:5508119/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:3718734/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:4802733/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT < 1:1180236/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:297116/1‑50 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:6164398/50‑1 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:4118647/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:5571278/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:6292462/49‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:753996/48‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:1318652/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:6591325/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:2227089/1‑50 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA > 1:2162758/1‑50 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:2031333/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:1119922/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:5872975/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:2987745/1‑50 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:5391484/1‑50 CAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:1027094/1‑50 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG < 1:6003143/49‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:978882/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:6008449/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:4920003/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:143371/50‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:3723210/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:2964363/49‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:3777672/49‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:81426/49‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:6485937/1‑50 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:6637948/1‑50 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:4290918/50‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:6309364/50‑1 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:6256810/1‑50 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:5903760/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:5057534/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:2708012/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:5978251/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:1270014/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:4653044/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT < 1:6018143/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:4858195/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 1:6257768/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:6621677/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:5607671/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:5636186/1‑50 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:1133276/50‑1 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:5752776/50‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:6069188/1‑50 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:4813339/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:3487313/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:134330/1‑49 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:1595513/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:6145732/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:6678269/50‑1 AGAACGCCCTTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:1771657/1‑50 AGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:1664200/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:5353219/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:4482077/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG < 1:4862998/50‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:6452453/49‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:97801/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:736424/1‑49 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > NC_000913/3136382‑3136429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |