Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 130 [0] | [0] 126 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3362161 | 0 (0.000) | 126 (1.420) | 72/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG |
Only 100 of 126 total aligned reads displayed.
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3567699/1‑49 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3418719/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:2811194/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:2601306/49‑1 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:5412185/1‑49 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:5085878/1‑49 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:3646855/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:5189134/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:1031937/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:5157075/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:346182/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:2290298/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1019355/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:3104643/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAACACTAACAA > 1:4145079/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:6607257/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:1136071/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:5381250/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:4173399/50‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1389572/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1563425/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:723679/1‑49 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2270794/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:1018732/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3162304/1‑50 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:6508973/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:5442301/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:116267/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:5414328/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:1061263/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGCCAG > 1:1445733/1‑48 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:5380971/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:740040/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:3677360/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:6383726/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:1124340/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:482950/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:3962856/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:3036544/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:6421221/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:2722882/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:2900626/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:6383315/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1861464/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:661654/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5280675/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:5350648/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:2460541/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:5243178/49‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:4976016/1‑50 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:586968/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:1187454/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:1602575/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:4696411/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:4805246/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:3017334/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:168562/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:5372659/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:6080590/49‑1 aAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:5228430/2‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1589739/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:3248823/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:6678573/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:3371734/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:3285207/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:394189/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:4354755/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:4877521/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:1931832/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:4022595/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:5501384/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:6381240/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:4795395/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:139403/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:6135109/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:6604818/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:3690212/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:2584659/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:2438507/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1805394/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:6269036/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4142895/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:648687/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:5236615/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4209990/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3005674/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:5396859/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:5635512/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:3343772/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:4532909/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:5452980/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:4556249/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:6482843/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:2046408/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:5497959/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:1701669/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:235301/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1892700/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:2253847/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:809093/49‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |