Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,362,162 Δ5,481 bp [yhcA][yhcF] [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3362162 3367642 5481 130 [0] [0] 126 [yhcA]–[yhcF] [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 33621610 (0.000)126 (1.420) 72/98 0.0 100% coding (50/675 nt) yhcA putative fimbrial chaperone YhcA
?NC_000913 3367643 = 0 (0.000)intergenic (+1/‑184) yhcF/yhcG DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG

Only 100 of 126 total aligned reads displayed.

TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3362113‑3362161
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG  >  NC_000913/3367643‑3367691
                                                                                                  
 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT                                                  >  1:3567699/1‑49
 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT                                                  >  1:3418719/1‑49
  CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA                                                >  1:2811194/1‑50
  CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA                                                 <  1:2601306/49‑1
   TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA                                                >  1:5412185/1‑49
   TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA                                                >  1:5085878/1‑49
   TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA                                                >  1:3646855/1‑49
    CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC                                               >  1:5189134/1‑49
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA                                             <  1:1031937/50‑1
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA                                             <  1:5157075/50‑1
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA                                             >  1:346182/1‑50
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA                                             >  1:2290298/1‑50
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC                                               <  1:1019355/48‑1
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC                                               <  1:3104643/48‑1
     AGACACATTACATTCACTGTATTTATAACAACATCAATGAACACTAACAA                                             >  1:4145079/1‑50
      GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT                                            <  1:6607257/50‑1
        CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC                                          >  1:1136071/1‑50
         ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC                                         >  1:5381250/1‑50
          CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG                                        <  1:4173399/50‑1
          CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG                                        <  1:1389572/50‑1
           ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG                                        >  1:1563425/1‑49
           ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG                                        >  1:723679/1‑49
           ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG                                        >  1:2270794/1‑49
            TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA                                      <  1:1018732/50‑1
            TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA                                      >  1:3162304/1‑50
              ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC                                     <  1:6508973/49‑1
              ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC                                     <  1:5442301/49‑1
              ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA                                      >  1:116267/1‑48
               CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG                                   <  1:5414328/50‑1
                ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG                                   >  1:1061263/1‑49
                 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGCCAG                                   >  1:1445733/1‑48
                  TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                                >  1:5380971/1‑50
                   CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                                <  1:740040/49‑1
                   CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                                <  1:3677360/49‑1
                   CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                                <  1:6383726/49‑1
                   CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                                >  1:1124340/1‑49
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA                              >  1:482950/1‑50
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA                              >  1:3962856/1‑50
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA                              <  1:3036544/50‑1
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT                               <  1:6421221/49‑1
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT                               <  1:2722882/49‑1
                    ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT                               <  1:2900626/49‑1
                     CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC                             >  1:6383315/1‑50
                        TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT                          >  1:1861464/1‑50
                        TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT                            <  1:661654/48‑1
                         ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT                          >  1:5280675/1‑49
                          TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA                        <  1:5350648/50‑1
                          TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA                        <  1:2460541/50‑1
                          TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC                         <  1:5243178/49‑1
                           TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG                       >  1:4976016/1‑50
                             ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG                      >  1:586968/1‑49
                             ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG                      <  1:1187454/49‑1
                              TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA                    >  1:1602575/1‑50
                              TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC                     <  1:4696411/49‑1
                              TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC                     <  1:4805246/49‑1
                              TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC                     <  1:3017334/49‑1
                                ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT                  <  1:168562/50‑1
                                ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT                  >  1:5372659/1‑50
                                ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT                   <  1:6080590/49‑1
                                 aAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                 >  1:5228430/2‑50
                                 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                 >  1:1589739/1‑50
                                 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                 <  1:3248823/50‑1
                                 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                 >  1:6678573/1‑50
                                 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                 <  1:3371734/50‑1
                                  AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG                <  1:3285207/50‑1
                                  AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG                <  1:394189/50‑1
                                  AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG                <  1:4354755/50‑1
                                   ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT               <  1:4877521/50‑1
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              >  1:1931832/1‑50
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              <  1:4022595/50‑1
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              >  1:5501384/1‑50
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              <  1:6381240/50‑1
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              >  1:4795395/1‑50
                                    CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT              <  1:139403/50‑1
                                     ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT             >  1:6135109/1‑50
                                     ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT             <  1:6604818/50‑1
                                      TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT            <  1:3690212/50‑1
                                      TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT             >  1:2584659/1‑49
                                      TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT             >  1:2438507/1‑49
                                      TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT             >  1:1805394/1‑49
                                       CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:6269036/1‑50
                                        AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:4142895/1‑49
                                        AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:648687/1‑49
                                        AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:5236615/1‑49
                                        AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:4209990/1‑49
                                        AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA           >  1:3005674/1‑49
                                         ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA         >  1:5396859/1‑50
                                          TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC        <  1:5635512/50‑1
                                          TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC        <  1:3343772/50‑1
                                           GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC        >  1:4532909/1‑49
                                            AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA      >  1:5452980/1‑50
                                            AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA      <  1:4556249/50‑1
                                            AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA      >  1:6482843/1‑50
                                            AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA      >  1:2046408/1‑50
                                            AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG       <  1:5497959/49‑1
                                             ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT     <  1:1701669/50‑1
                                              TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC    <  1:235301/50‑1
                                              TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC    <  1:1892700/50‑1
                                                CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG  <  1:2253847/50‑1
                                                CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG   <  1:809093/49‑1
                                                                                                  
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3362113‑3362161
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG  >  NC_000913/3367643‑3367691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.