| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 116 [0] | [0] 117 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 105 (1.270) | 62/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 118 total aligned reads displayed.
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:1452634/50‑1AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:230174/50‑1 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:2798025/50‑1 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:2071793/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAAATCAAACATTA < 1:4849920/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:224379/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:1912787/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:448962/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:1928166/49‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:867179/50‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT > 1:4370984/1‑50 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:5696909/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAAGTCAAACATTATAATC < 1:1926093/50‑1 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:4780383/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:324892/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:3349223/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:6651633/49‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:2339394/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:1939127/1‑50 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:3119560/1‑50 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:215432/49‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:1752822/1‑49 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:6367047/1‑49 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:1461167/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:4524034/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:5017428/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:1544608/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:4396386/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:1703915/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:2302513/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:3839290/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:3634206/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:1479046/47‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:2895414/47‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:2558814/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:5747148/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:3942130/49‑1 GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:3847864/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCTCTTGTGACGTA > 1:892384/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:4710981/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:6013084/49‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT < 1:382302/48‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT < 1:6267603/48‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG < 1:5784256/47‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:5107785/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:1694867/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:3829881/1‑50 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:5031363/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:3102146/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:4724437/48‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:2938511/48‑1 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:1936003/1‑50 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC < 1:5888710/50‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:6325988/50‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:5041844/50‑1 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:1206711/1‑50 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:6077338/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 1:2172579/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:3939630/1‑49 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:3841375/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:3130019/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:2621818/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:3167579/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:5028839/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:5387469/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:2748551/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:2651863/1‑49 GATATAGAATTCAAACATTATCATCCCTTGTGACGTAAAAACTGCAAAA > 1:6281996/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:2389507/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:6395317/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:31441/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:5784441/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:5766948/50‑1 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:534266/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 1:2210705/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 1:2148605/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:5522286/1‑48 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2629797/1‑48 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:790659/1‑50 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:6559257/1‑50 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:2732008/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:1663974/50‑1 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:1415505/49‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:550693/50‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:5786695/50‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:2439021/50‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:1009729/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:5549934/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:4850179/1‑49 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:4562681/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:432259/49‑1 AAACATTATAATCCCTTATGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:3674499/49‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:1027928/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:6034681/1‑48 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:6430051/1‑50 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:5632471/1‑50 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 1:2532179/50‑1 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 1:2941867/50‑1 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:3310826/1‑50 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:5853726/1‑49 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |