| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 61 [0] | [0] 61 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 61 (0.700) | 46/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:2077774/50‑1 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:5519594/50‑1 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 1:3265087/50‑1 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:5858783/1‑50 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:1907015/1‑50 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:3053496/50‑1 GCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT > 1:5702727/1‑50 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT < 1:4481181/49‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:1446808/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:4675409/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:2380488/1‑50 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:1396458/1‑50 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:5891750/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:3544046/1‑49 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA < 1:4545776/50‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:2113081/50‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:5069651/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:5955142/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 1:6629994/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATCGAGTTACGCCATTGTCCCAATC < 1:5942715/50‑1 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:1653535/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG < 1:2607103/50‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT < 1:5991021/50‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:6518764/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT < 1:4829545/50‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT < 1:5282597/50‑1 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 1:3140873/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC > 1:5024469/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 1:5849290/50‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC > 1:2387046/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 1:3759745/50‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:721394/1‑50 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:2268091/1‑50 GTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:639203/1‑50 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:5232728/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGA < 1:2333599/49‑1 TTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT > 1:3224540/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:3768307/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC < 1:5416602/50‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:325947/49‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:824231/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:556097/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:2241386/1‑50 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:2510313/1‑50 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:3551868/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:1778478/1‑49 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:994416/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:3531842/1‑48 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG < 1:52718/50‑1 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG < 1:3689568/50‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1694025/1‑49 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1189793/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCA < 1:4524680/50‑1 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 1:5154335/1‑49 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:5498578/1‑50 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:2826423/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:4296981/50‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:5930945/1‑50 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:3986929/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:614197/1‑50 AGTTACGCCATTGTCCCAATCGTCTGCCTGAATCGCAGCAGCGCAATGG < 1:3941420/49‑1 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |