| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 89 [0] | [0] 83 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 81 (0.920) | 54/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:1260253/1‑50ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:3798187/1‑50ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:86315/50‑1ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 1:4534155/1‑50 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:6113952/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:1141704/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:4124275/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:4677707/1‑50 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:5822997/1‑48 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:5034851/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:3717284/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:4684825/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC < 1:6413831/50‑1 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:610310/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:2741749/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:6136471/48‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:4572332/50‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:1631773/50‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:3007700/1‑50 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAA < 1:2116760/50‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA > 1:234396/1‑49 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA > 1:4380076/1‑49 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:5008325/1‑48 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:4873480/1‑48 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:4082938/1‑48 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT < 1:4969330/50‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT > 1:3217045/1‑50 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT > 1:718798/1‑50 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG < 1:1522093/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:1014392/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:3388924/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG > 1:1683393/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:659711/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:742027/50‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:4039664/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:4136727/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:3478949/50‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:6010292/50‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:2539812/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:4242116/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:2134709/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:2642394/1‑50 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:4118632/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:6535436/1‑49 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:4966696/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:5714270/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:3738800/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:1892324/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:3162772/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:5402363/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:1915579/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:6636493/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG < 1:4705303/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:2509899/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:1934370/50‑1 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:6112772/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:1332507/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:310033/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:6363463/50‑1 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC > 1:4036268/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:5300950/49‑1 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:2234798/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:1863750/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:5292958/49‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:947268/50‑1 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:6576276/50‑1 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA > 1:2714436/1‑50 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT > 1:5643263/1‑50 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:5443019/50‑1 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT > 1:3278945/1‑50 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT > 1:2606478/1‑50 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT > 1:1529351/1‑50 TGAATGGATGCAGCCTCCCTAAAAAAGCGGCTCCATCGTGGCGGATTATT > 1:4387853/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:3978219/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:5077103/49‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:6204640/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 1:2547593/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:1109624/1‑49 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > 1:5431832/1‑50 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > 1:6684104/1‑50 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:3343276/1‑50 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |