| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 114 [0] | [0] 112 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 109 (1.260) | 64/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 112 total aligned reads displayed.
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC > NC_000913/3906550‑3906646 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:865295‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:3673643‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:737793‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:4476296‑M2/1‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:6304506‑M2/49‑49 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 1:573684‑M2/48‑50 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc < 1:4465413‑M2/4‑1 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc > 1:6066788‑M2/47‑50 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:1679981‑M2/45‑50 (MQ=255) ctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:5329998‑M2/44‑49 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:3150365‑M2/42‑50 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:5914553‑M2/8‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:647142‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:5268050‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:4896029‑M2/10‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:6652903‑M2/40‑48 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCa < 1:1425800‑M2/11‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg < 1:891254‑M2/12‑1 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:5138669‑M2/39‑50 (MQ=255) tgtaataatgtagcatcgtgtcttgcgaggataagtgcCGACTTCACCAg < 1:5816865‑M2/12‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggatacgtgcCGACTTCACCAGTa > 1:4536310‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 1:5180989‑M2/13‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 1:3266619‑M2/13‑1 (MQ=255) aataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:6259036‑M2/36‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:1543760‑M2/35‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:1924660‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt > 1:5353866‑M2/35‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:6440029‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:1281312‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:3070410‑M2/17‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:6540892‑M2/17‑1 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:6257063‑M2/33‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:4063020‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:4501286‑M2/32‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct < 1:4573348‑M2/18‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:4296677‑M2/20‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:5131300‑M2/20‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:2994570‑M2/20‑1 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:4879575‑M2/30‑50 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:566404‑M2/30‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:3004818‑M2/22‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:1146429‑M2/29‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:1774373‑M2/22‑1 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:1637155‑M2/28‑50 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:3825396‑M2/28‑50 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGtt < 1:5780717‑M2/24‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:117465‑M2/27‑49 (MQ=255) cctggtgtattgcgaggataagtgcCGACTTCACCAGTATGCTCTGGTTa < 1:1481696‑M2/25‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 1:1559334‑M2/26‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:23833‑M2/26‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:1701471‑M2/26‑1 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:575862‑M2/24‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:6410968‑M2/23‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg < 1:1659828‑M2/27‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:2211804‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:3543347‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:4720802‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:5328922‑M2/29‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:179165‑M2/30‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:3253891‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:2652589‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 1:2807399‑M2/31‑1 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:4237712‑M2/18‑50 (MQ=255) cttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt > 1:5693615‑M2/18‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt < 1:5012810‑M2/34‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:4444712‑M2/33‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:1194039‑M2/33‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:2257832‑M2/33‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:3533344‑M2/33‑1 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:3533819‑M2/33‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 1:4811708‑M2/36‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg > 1:1043074‑M2/14‑50 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg > 1:4879238‑M2/14‑50 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg < 1:1270302‑M2/37‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg < 1:5364013‑M2/37‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:2032126‑M2/13‑50 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:303632‑M2/38‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:1337162‑M2/40‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:1573773‑M2/40‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:5050271‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:1277858‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:4601476‑M2/41‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg < 1:1042181‑M2/41‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGc > 1:5701397‑M2/9‑50 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:6053287‑M2/43‑1 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:2278941‑M2/7‑49 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:4790772‑M2/7‑49 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:607258‑M2/7‑49 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg > 1:4631503‑M2/7‑49 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt > 1:5056334‑M2/5‑50 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:3888872‑M2/46‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt > 1:5613785‑M2/5‑50 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt < 1:4358192‑M2/46‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt > 1:6047870‑M2/5‑50 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 1:139922‑M2/47‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 1:2152192‑M2/47‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 1:1119392‑M2/47‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg > 1:1578849‑M2/2‑48 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGc < 1:6674603‑M2/48‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGc < 1:4185444‑M2/48‑1 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC > NC_000913/3906550‑3906646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |