| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 77 [0] | [0] 77 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 74 (0.840) | 53/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129347‑1129444 | tAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg > 1:5923514/1‑50 (MQ=255)tAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg > 1:472068/1‑50 (MQ=255) aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:342219/49‑1 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt < 1:3452069‑M1/50‑3 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:6220201‑M1/1‑48 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 1:6218662‑M1/49‑2 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:3369121‑M1/50‑5 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg > 1:3436667‑M1/1‑46 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg < 1:4050747‑M1/50‑5 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:365243‑M1/1‑45 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:3590685‑M1/1‑45 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:3789921‑M1/50‑7 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt < 1:5382805‑M1/50‑8 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:1533458‑M1/49‑10 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:6625398‑M1/1‑40 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:1272139‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:104344‑M1/50‑12 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 1:5153123‑M1/50‑13 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:1068862‑M1/1‑38 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:3719685‑M1/1‑36 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca < 1:139726‑M1/50‑15 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:6667771‑M1/1‑35 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:6399857‑M1/50‑17 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata < 1:2009274‑M1/50‑17 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata > 1:1902237‑M1/1‑34 (MQ=255) cgGAAGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata > 1:1142525‑M1/1‑34 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:6368001‑M1/50‑18 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:2193971‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:6417392‑M1/1‑31 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:6702559‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:3974001‑M1/1‑30 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:4903090‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:5444770‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:5332289‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:5401226‑M1/50‑23 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:2305836‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:5799001‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 1:1321672‑M1/1‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:2380485‑M1/49‑25 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:3507226‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:1053816‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:5405350‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:1547397‑M1/50‑29 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:1368163‑M1/1‑22 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:3392941‑M1/1‑22 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:3409574‑M1/50‑30 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg < 1:3431000‑M1/50‑30 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggt < 1:2528389‑M1/50‑31 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:4522669‑M1/1‑20 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat > 1:4813276‑M1/1‑18 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:3767335‑M1/1‑17 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:2654517‑M1/1‑16 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:5350498‑M1/50‑35 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:1521303‑M1/1‑16 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:3809365‑M1/1‑13 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:2173747‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:399638‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:6565105‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:5942927‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:1255110‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:878406‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:3638576‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:27482‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:548928‑M1/1‑11 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:5573733‑M1/1‑10 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:4117489‑M1/1‑10 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:3947940‑M1/50‑43 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:5528453‑M1/1‑7 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:1800108‑M1/1‑7 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc < 1:578268‑M1/49‑45 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:5656488‑M1/48‑44 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:1630630‑M1/48‑44 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:1001484‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:1849998‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:1855200‑M1/1‑3 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct < 1:5595065‑M1/50‑49 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:1129636‑M1/1‑2 (MQ=255) | TAAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129347‑1129444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |