mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,070,462 | 0 | T | C | 43.5% | 43.7 / 119.8 | 85 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 36.2% | 190.9 / 215.4 | 177 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 941,713 | 0 | T | G | 35.3% | 140.0 / 25.4 | 68 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 3,261,055 | 0 | A | C | 30.8% | 157.3 / 15.2 | 65 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| * | NC_000913 | 987,494 | 0 | T | G | 29.3% | 145.8 / 16.4 | 58 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 4,111,752 | 0 | T | C | 25.4% | 170.6 / 18.1 | 71 | K155E (AAA→GAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 3,499,600 | 0 | T | G | 25.0% | 153.8 / 15.5 | 68 | G51G (GGT→GGG) | yhfL | DUF4223 domain‑containing lipoprotein YhfL |
| * | NC_000913 | 2,792,979 | 0 | C | T | 24.3% | 141.2 / 26.1 | 74 | A82V (GCT→GTT) | gabT | 4‑aminobutyrate aminotransferase GabT |
| * | NC_000913 | 2,029,274 | 0 | C | T | 24.1% | 121.6 / 13.1 | 58 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 770,897 | 0 | T | G | 23.9% | 239.5 / 17.1 | 93 | intergenic (+286/‑561) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| * | NC_000913 | 4,101,507 | 0 | T | G | 22.7% | 259.5 / 13.3 | 88 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 4,112,578 | 0 | T | G | 22.7% | 187.9 / 12.0 | 75 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein YiiR |
| * | NC_000913 | 2,483,268 | 0 | T | A | 22.4% | 208.4 / 18.0 | 76 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 3,285,842 | 0 | G | T | 21.5% | 258.0 / 14.3 | 80 | C122F (TGC→TTC) | agaD | galactosamine‑specific PTS enzyme IID component |
| * | NC_000913 | 718,659 | 0 | T | A | 21.1% | 198.3 / 17.9 | 71 | D601V (GAT→GTT) | speF | ornithine decarboxylase, degradative |
| * | NC_000913 | 4,161,142 | 0 | C | A | 20.7% | 255.6 / 26.2 | 88 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 4,223,597 | 0 | C | T | 20.6% | 163.3 / 12.9 | 68 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 2,040,075 | 0 | C | G | 20.5% | 208.0 / 19.1 | 73 | L200V (CTG→GTG) | msrP | periplasmic protein‑L‑methionine sulfoxide reductase catalytic subunit |
| * | NC_000913 | 2,261,811 | 0 | T | G | 20.3% | 183.8 / 14.6 | 65 | K185N (AAA→AAC) | fruK | 1‑phosphofructokinase |
| * | NC_000913 | 1,577,123 | 0 | A | C | 20.2% | 226.3 / 11.2 | 80 | V166G (GTA→GGA) | yddB | putative TonB‑dependent receptor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3318213 = | 111 (1.250) | 3 (0.040) +AAATGGTC |
3/82 | 7.2 | 3.1% | noncoding (77/77 nt) | metY | tRNA‑Met |
| ? | NC_000913 | 3946876 = | NA (NA) | noncoding (5/77 nt) | aspT | tRNA‑Asp | |||||
| * | ? | NC_000913 | = 2947684 | NA (NA) | 3 (0.040) +AATGGTC |
3/84 | 7.3 | NA | intergenic (+1/+73) | metV/amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C |
| ? | NC_000913 | 3946876 = | NA (NA) | noncoding (5/77 nt) | aspT | tRNA‑Asp | |||||