Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2072938	2073115	178	2 [1]	[1] 2	flu	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

AACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGT  >  NC_000913/2072814‑2073002                                                                                                                            |                                                                  aaCGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGTTAACCGCCAGGGCGGGCACCCTGGGGGGCCCCACCACGCGGAAAAAGGGC‑CCCCAATTACCCTTTCCCGGAACACgggagaac                                                             >  1:118789/1‑123 (MQ=255)                                                             cgcACACTGGCGGGCACCACCACGCTGAATTACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGt  <  1:146027/128‑1 (MQ=255)                                                                                                                            |                                                                  AACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGT  >  NC_000913/2072814‑2073002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑