Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2559215	2559382	168	2 [1]	[1] 2	intZ	CPZ‑55 prophage; putative phage integrase IntZ

GTCGATTGTCGATATAACCGCCC‑GTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAACGAGGAATCCGGTTGCAGATCTTGATACGGCACTGAAGGCCCGCCGACCTGGTCACAACGCGTGGATACCGATTAGTGAAATTCCGGC  >  NC_000913/2559286‑2559510                                                                                                   |                                                                                                                                gTCGATTGTGTATATAACCGCCCTGTG‑CGGGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGa                                                                                                  <  1:190690/129‑1 (MQ=255)                                                                                                   ggTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAAAGAGGAATCCGGTTGCAGATCTTGATACGGCCCTGAAGGCCCGCCGACCTGGTCCAAACGCGTGGAACCCCATTAGTGAAATTCGGGc  >  1:398714/1‑128 (MQ=255)                                                                                                   |                                                                                                                                GTCGATTGTCGATATAACCGCCC‑GTGACGTGCTGGCATTACTCCAGAAGAAAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAACGAGGAATCCGGTTGCAGATCTTGATACGGCACTGAAGGCCCGCCGACCTGGTCACAACGCGTGGATACCGATTAGTGAAATTCCGGC  >  NC_000913/2559286‑2559510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑