Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3462437	3462471	35	2 [0]	[1] 2	gspJ	Type II secretion system protein GspJ

CTCACAGAAAGAAATCCAGCAGTTCAATCAGCTACAGCGCACCATCACCATTCTTGATAACGATCTCCTGCAACTGGTCGCCCGGAGGAATCGGAGTACGGAC‑AAAATCATGGTGTTGGGTGAAGAAGCTATTTTTAC  >  NC_000913/3462463‑3462600          |                                                                                                                                  cTCACAGAAAGAAATCCAGCAGTTCAATCAGCTACAGCGCACCATCACCATTCTTGATACGGATCTCCGCAAACTGTTCCCCCGG‑GGAAATGGGGGACGGGCAAAAACCATGGTGTGGGGGGaagaagt           >  1:141769/1‑128 (MQ=255)          agaaaTCCAGCAGTTCAATCAGCTACAGCGCACCATCACCATTCTTGATAACGATCTCCTGCAACTGGTCGCCCGGAGGAATCGGGGTACGGCC‑AAAATCAGGGTTTGGGGTGAA‑AAGGTAtttttta  >  1:315632/1‑126 (MQ=255)          |                                                                                                                                  CTCACAGAAAGAAATCCAGCAGTTCAATCAGCTACAGCGCACCATCACCATTCTTGATAACGATCTCCTGCAACTGGTCGCCCGGAGGAATCGGAGTACGGAC‑AAAATCATGGTGTTGGGTGAAGAAGCTATTTTTAC  >  NC_000913/3462463‑3462600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑