New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	5 (0.740)	3 (0.510)	3/222	0.4	52.8%	coding (290/630 nt)	ycfK	e14 prophage; protein StfP
	?	NC_000913	1209619 =	1 (0.170)					pseudogene (37/537 nt)	stfE	e14 prophage; putative side tail fiber protein fragment

GCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATG‑GCACTGTG‑CAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCA  >  NC_000913/1207666‑1207890                                                                                                                               |                                                                                                     gCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCACACATCCGTTGGGCGTTCGCAATGCGGTGG‑GCCATGTG‑CAAGCGGC‑CGCAAAAACCTTGGt                                                                                                  >  1:222106/1‑128 (MQ=12)         ggAGAAGGGGGGGGACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATG‑GCACTGTG‑CAAACGGCTCTCGAAAACCTTGGTTTGGgaga                                                                                          <  1:574674/129‑1 (MQ=255)               ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCGTTTAAGCCGCAGAAACCCGTTTGGC‑AGAACCAAACTGATGTGCTC‑GTGACAAAGCGC‑CTCGAAAACCGTGGTTTGGGAGAggggac                                                                                    >  1:124015/1‑125 (MQ=255)                                                           tAAGCCCCAAAAACCCGTTTGG‑GATATCCAATCGGAGT‑GCACTGTG‑CCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                       <  1:89854/129‑1 (MQ=25)                                                                      ccctgtaaaaaagagggattattgcatttgcttgtttatttttcagtttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                >  1:319228‑M1/58‑128 (MQ=255)                                                                              aaagcaggaatgattccatttgccttttatttcctccttttcctaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg                       >  1:578199‑M1/50‑129 (MQ=255)                                                                                             ccatttgcttgttatttcttcattttcataaacgTTGGTCTGGTCGAAGGAGCAAAACTCAATGCAGCAACGGATACATTAGGACGCACCGGTTTCATAGCTAACCCGGGTATGTTGGTTGGTTTTGAg        <  1:432015‑M1/95‑1 (MQ=255)                                                                                                 g‑gCACTGTG‑CAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATACTCATACCGGTTATGATTGGGGGTTTTGGGCacaca  >  1:518691/1‑125 (MQ=38)                                                                                                                               |                                                                                                     GCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATG‑GCACTGTG‑CAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCA  >  NC_000913/1207666‑1207890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.