New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579072 (0.300)5 (0.790) 4/238 0.3 84.2% intergenic (+8/+16) crl/insB9 RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl RNA polymerase holoenzyme assembly factor Crl

GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC  >  NC_000913/258594‑258807
                                                                                          |                                                                                                                            
aggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaattgaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg                                                                                        <  1:544507‑M2/39‑1 (MQ=255)
         caatgacgttaccgagtggaaccccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCa                                                                              <  1:550532‑M2/48‑1 (MQ=255)
                                                  aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCAACTTGAACCCGGCACCGGAAGTGCGTGACTTCTGGGgcttg                                     >  1:544545‑M2/41‑127 (MQ=255)
                                                  aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCAACGTGAAACCGGCCCCGGAAGGGCGTGAATTTTGGGGCtgg                                     >  1:320790‑M2/41‑129 (MQ=255)
                                                             cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCAACGTGAAACCGGCACCGGAA‑TGCGTGGAATCTTGGgccggggggtgggacct                         >  1:329576‑M2/30‑124 (MQ=255)
                                                                                    aaGGAAAGTGCAAAAGTAACCG‑TTTTTTTTCCAGTTTTTGGGTGTTATCCG‑CAACGGGAAACCGGCACCGGAAGGGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc  <  1:191251/129‑1 (MQ=255)
                                                                                          |                                                                                                                            
GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTG‑TATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAC  >  NC_000913/258594‑258807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.