BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	765,191	Δ1 bp	coding (685/723 nt)	mngR ←	DNA‑binding transcriptional repressor MngR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	765,189	0	T	.	100.0%	379.4 / NA	79	coding (687/723 nt)	mngR	DNA‑binding transcriptional repressor MngR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (38/41); total (38/41)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACAC  >  NC_000913/765140‑765233

gCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAt                                              <  1:2576876/50‑1 (MQ=255)

 ccTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtt                                             <  1:6309631/50‑1 (MQ=255)

  cTTTTTTTTGCTTATCGCGATGATTTTCGCTGCGCTGTCAGGGGAAAtt                                             <  1:6904005/49‑1 (MQ=37)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                            <  1:3561367/50‑2 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                            <  1:1219754/50‑2 (MQ=255)

  cTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                            >  1:369079/1‑49 (MQ=255)

    tttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAtta                                            >  1:7252852/1‑47 (MQ=255)

     ttttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAAttat                                           <  1:4711504/48‑3 (MQ=255)

      tttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                       >  1:7101413/1‑50 (MQ=39)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                       <  1:549822/49‑1 (MQ=38)

       ttGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGt                                       <  1:7789794/49‑1 (MQ=38)

        tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                     >  1:1001591/1‑50 (MQ=39)

        tgtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                     >  1:4146804/1‑50 (MQ=39)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                     <  1:562436/49‑1 (MQ=38)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCa                                     <  1:3114569/49‑1 (MQ=38)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                    >  1:5090320/1‑50 (MQ=39)

         gtgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                    >  1:5363125/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCAt                                    <  1:7851561/49‑1 (MQ=38)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                   <  1:5138522/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                   >  1:5043976/1‑50 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                   <  1:119145/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                   <  1:813779/50‑1 (MQ=39)

          tgCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATc                                   >  1:8269705/1‑50 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                 <  1:2713449/50‑1 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                 <  1:3504447/50‑1 (MQ=39)

            cTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCg                                  <  1:431082/49‑1 (MQ=38)

             ttATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCgg                                 >  1:1023509/1‑49 (MQ=38)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                               >  1:4975839/1‑50 (MQ=39)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                               >  1:1806173/1‑50 (MQ=39)

              tATCGCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTa                               >  1:3114087/1‑50 (MQ=39)

                 cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA                            >  1:5844512‑M1/1‑50 (MQ=255)

                  gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt                           <  1:4445582‑M1/50‑2 (MQ=255)

                   cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta                          <  1:4175234‑M1/50‑3 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                         >  1:2585981‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                         >  1:6718058‑M1/1‑47 (MQ=255)

                    gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag                         >  1:4878337‑M1/1‑47 (MQ=255)

                     atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                        <  1:6169912‑M1/50‑5 (MQ=255)

                      tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca                       <  1:2675961‑M1/50‑6 (MQ=255)

                      cgattTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc                        >  1:3004855‑M1/2‑45 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                      >  1:5328323‑M1/1‑44 (MQ=255)

                       gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                      >  1:1559237‑M1/1‑44 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                     >  1:750955‑M1/1‑43 (MQ=255)

                        atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa                      <  1:4470323‑M1/49‑7 (MQ=255)

                         ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat                     >  1:943518‑M1/1‑42 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                    >  1:4640906‑M1/1‑41 (MQ=255)

                          tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc                    >  1:8261873‑M1/1‑41 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:2755942‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:1036458‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:435804‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:7945444‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:6880173‑M1/49‑11 (MQ=255)

                            tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa                  <  1:178319‑M1/49‑11 (MQ=255)

                             cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                >  1:3974461‑M1/1‑38 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaatc               >  1:4750969‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               >  1:5332923‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               >  1:7783764‑M1/1‑37 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               <  1:729873‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               <  1:1390693‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               <  1:7886729‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc               <  1:6491303‑M1/50‑14 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                <  1:7551498‑M1/49‑13 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                <  1:6598643‑M1/49‑13 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                <  1:1032473‑M1/49‑13 (MQ=255)

                              gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac                <  1:4262621‑M1/49‑13 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag           <  1:3011220‑M1/50‑18 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag           <  1:7175261‑M1/50‑18 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa            <  1:2725883‑M1/49‑17 (MQ=255)

                                  cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaa            <  1:897730‑M1/49‑17 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc          <  1:3644006‑M1/50‑19 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc          <  1:2464680‑M1/50‑19 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc          >  1:3541446‑M1/1‑32 (MQ=255)

                                   gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc          >  1:7464288‑M1/1‑32 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca        >  1:5986028‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca        >  1:5328314‑M1/1‑30 (MQ=255)

                                     tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca        >  1:1187048‑M1/1‑30 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca      >  1:5071465‑M1/1‑28 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca        <  1:5333171‑M1/48‑21 (MQ=255)

                                       tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca        <  1:2182103‑M1/48‑21 (MQ=255)

                                        cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca      >  1:3186145‑M1/1‑27 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata    >  1:4454851‑M1/1‑26 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata    <  1:1788143‑M1/50‑25 (MQ=255)

                                         aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata    >  1:5755559‑M1/1‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat   <  1:1650856‑M1/50‑26 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat   >  1:1659936‑M1/1‑25 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat   >  1:7385281‑M1/1‑25 (MQ=255)

                                          gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat   <  1:4371228‑M1/50‑26 (MQ=255)

                                           ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg  >  1:3213516‑M1/1‑24 (MQ=255)

GCCTTTTTTGTGCTTATCGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACAC  >  NC_000913/765140‑765233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`