BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,400,309	Δ1 bp	coding (1465/1527 nt)	abgT ←	p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,400,308	0	A	.	100.0%	504.1 / NA	101	coding (1466/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (46/55); total (46/55)

Only 100 of 108 total aligned reads displayed.

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

tGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               <  1:618781/50‑1 (MQ=255)

tGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  1:3502077/1‑50 (MQ=255)

 gggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  1:7448476/1‑49 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             >  1:3281240/1‑48 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCac                                              <  1:5367313/49‑2 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCac                                              <  1:2432881/49‑2 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCac                                              <  1:7992207/49‑2 (MQ=255)

          cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  1:3506657/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:67221/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:2813843/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:2435153/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:6759317/50‑1 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:8280828/50‑1 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:5027987/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:2981270/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:3203051/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:1217067/50‑1 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  1:6259378/50‑1 (MQ=255)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATact                              <  1:4922113/50‑2 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:1324244‑M1/50‑4 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:4789005‑M1/50‑4 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  1:5566535‑M1/1‑47 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:3709834‑M1/50‑4 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  1:5175063‑M1/1‑47 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:6031095‑M1/1‑46 (MQ=255)

                   aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:8064320‑M1/1‑45 (MQ=255)

                   aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:8021541‑M1/1‑45 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:785246‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:2453133‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:5850180‑M1/49‑6 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:870527‑M1/1‑43 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:5335935‑M1/1‑43 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  1:7036255‑M1/49‑8 (MQ=255)

                       gtagaCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  1:4704783‑M1/48‑10 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       >  1:7642073‑M1/1‑41 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:6351913‑M1/1‑40 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:4327537‑M1/1‑40 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    <  1:8055135‑M1/50‑12 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:7698350‑M1/1‑39 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:6215561‑M1/1‑39 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaaa                   <  1:2904656‑M1/50‑13 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  1:1496255‑M1/1‑37 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  <  1:6312282‑M1/50‑14 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  <  1:5180370‑M1/50‑14 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 >  1:7305520‑M1/1‑36 (MQ=255)

                             cGACAAGATACCACGCTAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:164217‑M1/1‑35 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:1220633‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:8048703‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:460736‑M1/1‑35 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:4585704‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:4564164‑M1/1‑35 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:1502052‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:2321585‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:1867040‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:5414121‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:326459‑M1/1‑34 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  1:6108847‑M1/50‑17 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  1:6284044‑M1/1‑33 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  1:2848074‑M1/1‑33 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:3822320‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:4150999‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:857516‑M1/50‑18 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:821470‑M1/50‑19 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:1944792‑M1/1‑32 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:3998875‑M1/1‑32 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:3750177‑M1/50‑19 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:2226140‑M1/50‑19 (MQ=255)

                                 acgatACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:2084248‑M1/3‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  1:4761255‑M1/50‑20 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:5610010‑M1/1‑31 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:8006784‑M1/1‑30 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:7962604‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:7430466‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:6770067‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:2698528‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:1634288‑M1/50‑21 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:5673492‑M1/50‑22 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:5172666‑M1/50‑22 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:7058702‑M1/50‑22 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         >  1:543571‑M1/1‑28 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  1:2993822‑M1/50‑23 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  1:4473509‑M1/50‑23 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         >  1:3925405‑M1/1‑28 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:6922511‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:5443497‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:3889054‑M1/1‑27 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  1:7544437‑M1/49‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  1:6115358‑M1/49‑25 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     >  1:6809326‑M1/1‑24 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     <  1:7454851‑M1/50‑27 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     >  1:718147‑M1/1‑24 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     <  1:4626900‑M1/50‑27 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:79663‑M1/50‑28 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:2493263‑M1/1‑23 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:4155115‑M1/1‑23 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   <  1:2509639‑M1/50‑29 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   >  1:4662907‑M1/1‑22 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  1:2039655‑M1/1‑21 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  1:2529406‑M1/1‑21 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  1:6999691‑M1/1‑21 (MQ=255)

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`