| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 126 [0] | [0] 126 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 117 (1.120) | 69/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 129 total aligned reads displayed.
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGGGATACCGGCATCGA > 1:1880678/1‑50 TTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:2650445/1‑49 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:1219660/49‑1 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:170200/49‑1 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:3567436/49‑1 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT > 1:4977935/1‑50 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAG < 1:843877/49‑1 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC > 1:5504657/1‑50 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT > 1:137256/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:3553603/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:1501933/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG > 1:8003235/1‑49 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG > 1:8273760/1‑49 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG < 1:8095548/49‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:1904576/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:1927290/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:1755976/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC < 1:471034/47‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:3923453/1‑50 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:2820401/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:7642742/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:2388723/1‑50 AGAAAATTCACGGCATCGGCTAGGGCGATACCGGCATCGATAGTCTGTAT > 1:5994684/1‑50 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:4715185/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:1092963/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:3277073/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:2962247/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:7445756/1‑49 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:8219505/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:7505160/50‑1 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:2354517/1‑50 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:2188834/1‑50 AATTCACGGCATCGGCTAGGGTGATACCGGCCTCGATAGTCTGTATCAG > 1:903916/1‑49 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1289060/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1334305/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:2956686/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:529508/50‑1 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA < 1:2933620/50‑1 TCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT > 1:2745918/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG > 1:7526993/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:3188414/49‑1 ACGGCAGCGGCTAGGGTGATACGGGCATCGATAGTCTGTATCAGGAATGT < 1:6429753/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:809545/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC > 1:6817091/1‑50 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:4874658/50‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG > 1:3292481/1‑50 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:2238163/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:3746531/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:2113543/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:6361749/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:6079018/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:7753279/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:685912/1‑50 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:2911925/50‑1 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:6781804/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:1881519/49‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:8142022/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:2255638/49‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:5082753/1‑49 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:7596723/1‑49 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:1030332/1‑49 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:5156907/1‑50 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA < 1:8284672/50‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:1436872/1‑50 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:4325672/1‑50 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:5071990/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:2849059/1‑49 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:1/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:4951870/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA < 1:111100/49‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:63806/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:2412800/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:2333477/50‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA < 1:7856035/50‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA > 1:1394745/1‑49 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA > 1:181917/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:5451545/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:2995419/49‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:891321/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:3887226/1‑49 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:3772963/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:7364209/1‑50 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:7567094/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:2433548/1‑50 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:4237220/1‑50 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC < 1:4184254/50‑1 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:5947944/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC > 1:4464761/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC > 1:810428/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:7937756/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:2501881/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:4587523/50‑1 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:5517858/1‑49 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:6663489/1‑49 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA < 1:5999674/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA < 1:3564773/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT < 1:7014837/50‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:6739943/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:3327029/1‑50 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC < 1:3049070/50‑1 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATC > NC_000913/325411‑325459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |